Guide to Clean Beauty Shops & Eco Boutiques in San Diego

Where to shop local, clean, and consciously in America’s Finest City.
As a San Diego mama, I love discovering places that align with how I care for my body and my family – clean ingredients, sustainable packaging, and brands that value health and the planet. Whether you’re new to clean beauty or looking to explore eco-minded shops in the area, this guide will help you find the best local spots to shop clean.
Here are some of the top clean beauty shops and eco boutiques in San Diego—all mom-approved and perfect for exploring on your own or with the kids in tow.
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Shops & Boutiques
1. Shop Good – North Park & Del Mar

Shop Good is a go-to for curated, effective clean beauty and wellness. From nontoxic skincare to clean cosmetics, every product is ingredient-vetted and mama-safe. Plus, their in-house spa offers facials and treatments using only clean brands—perfect for some solo self-care.
📍Location:North Park: 3027 University Ave | Del Mar: 12857 El Camino Real
🌱 Highlights: Skincare, makeup, wellness, and facials
👶 Vibe: Friendly, modern, and stroller-accessible
2. En Concordia – South Park

A hidden gem, En Concordia blends clean beauty, natural wellness, and sustainable home goods in one lovely space. They carry brands like Innersense, RMS Beauty, and other earth-conscious options. It feels like walking into a cozy, elevated apothecary.
📍Location: 2210 30th St, San Diego, CA 92104
🌱 Highlights: Clean hair care, herbal remedies, skincare
👶 Vibe: Calming and warm, perfect for quick mom-alone stops
3. Origins Grocer – North Park

Formerly known as The Mighty Bin, this locally loved shop offers toxin-free, low-waste groceries and household products—plus compost drop-off and community vibes. Their curated selection includes bulk body care, plastic-free tools, and clean pantry staples.
📍 Location: 2855 El Cajon Blvd Suite 4, San Diego, CA 92104
🌱 Highlights: Zero-waste pantry + clean beauty refills
👶 Vibe: Wholesome, community-focused, and family-inclusive
4. Earthwell Refill – Kensington

This charming refill shop stocks organic personal care and household goods in bulk. You’ll find nontoxic shampoos, body washes, and lotions—all refillable, all mama- and earth-safe.
📍 Location: 4114 Adams Ave, San Diego, CA 92116
🌱 Highlights: Refillable clean beauty + eco-home items
👶 Vibe: Low-key and educational for littles
5. Shine Natural Market – Encinitas

Part market, part zero-waste haven—Shine offers clean products ranging from shampoo to produce to beauty refills. Their refill station is great for reducing waste while grabbing family essentials.
📍 Location: 937 S Coast Hwy 101 Suite C-110, Encinitas, CA 92024
🌱 Highlights: Bulk beauty & body care, local brands
👶 Vibe: Laid-back beach town market
6. Sonora Refillery – Oceanside

Sonora specializes in plastic-free personal care with an emphasis on paraben-free, sulfate-free beauty goods. Perfect for switching your whole family to a low-tox lifestyle.
📍 Location: 1012 S Coast Hwy Suite A, Oceanside, CA 92054
🌱 Highlights: U.S.-made, family-safe formulas
👶 Vibe: Chill and community-focused
7. Wild Island Collective – University Heights

Part plant shop, part clean lifestyle boutique, Wild Island has a curated lineup of small-batch skincare and wellness goods. Fat and the Moon fans, this is your spot.
📍 Locations: 2875 Adams Ave, San Diego, CA 92116
🌱 Highlights: Botanical skincare, mama rituals, gifts
👶 Vibe: Planty, peaceful, stroller-accessible with caution